STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvrA1Excinuclease ATPase subunit. (943 aa)    
Predicted Functional Partners:
uvrB
Helicase subunit of the DNA excision repair complex.
 
 0.996
uvrA3
Excinuclease ATPase subunit.
  
  
 
0.988
uvrC
Nuclease subunit of the excinuclease complex.
 
 0.980
mutL
DNA mismatch repair enzyme (predicted ATPase).
    
 0.896
EAQ38763.1
Exonuclease family protein; Nuclease subunit of the excinuclease complex.
 
 0.844
mfd
Transcription-repair coupling factor (superfamily II helicase).
   
 0.844
EAQ40191.1
DNA polymerase III, epsilon subunit; Nuclease subunit of the excinuclease complex.
 
 0.760
EAQ40163.1
Putative lysine decarboxylase.
       0.707
ruvB
Holliday junction resolvasome, helicase subunit.
 
 
 0.578
EAQ38377.1
Superfamily I DNA and RNA helicases.
 
 
 0.533
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.