STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadDlong-chain-fatty-acid-CoA ligase; Long-chain acyl-CoA synthetases (AMP-forming). (589 aa)    
Predicted Functional Partners:
EAQ39136.1
Acyl-CoA dehydrogenases.
  
 0.666
EAQ38802.1
Acyl-CoA dehydrogenases.
  
 0.666
EAQ39346.1
Acyl-CoA dehydrogenases.
  
 0.666
paaN
Phenylacetic acid degradation protein paaN; NAD-dependent aldehyde dehydrogenases.
  
 0.624
fadB
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.612
thrS
threonyl-tRNA synthetase.
   
 
  0.578
EAQ40165.2
Putative protein-S-isoprenylcysteine methyltransferase.
  
    0.576
alaS
alanyl-tRNA synthetase.
  
 
  0.557
EAQ38354.1
Hypothetical protein; FOG: Ankyrin repeat.
   
 0.548
EAQ40212.2
Hypothetical protein.
   
 0.548
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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