STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ40241.1Peptidase family M13; Predicted metalloendopeptidase. (671 aa)    
Predicted Functional Partners:
EAQ40242.1
Hypothetical protein.
       0.661
EAQ39180.1
Chaperonin GroEL (HSP60 family).
     
 0.577
EAQ38829.1
propionyl-CoA carboxylase beta chain; Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
     
 0.514
EAQ40240.1
Cold shock proteins.
       0.497
EAQ40243.3
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.481
ruvB
Holliday junction resolvasome, helicase subunit.
   
    0.473
polA
DNA polymerase I - 3'-5' exonuclease and polymerase domains.
  
  
 0.456
EAQ38354.1
Hypothetical protein; FOG: Ankyrin repeat.
    
 0.439
EAQ40212.2
Hypothetical protein.
    
 0.439
EAQ40448.1
Hypothetical protein; FOG: Ankyrin repeat.
    
 0.439
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.