STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ40267.1Hypothetical protein; Capsular polysaccharide biosynthesis protein. (240 aa)    
Predicted Functional Partners:
EAQ37843.1
Low molecular weight phosphotyrosine protein phosphatase; Protein-tyrosine-phosphatase.
     
 0.905
EAQ40268.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.880
EAQ37790.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.826
EAQ40269.1
Periplasmic protein involved in polysaccharide export.
 
     0.643
EAQ40266.1
Hypothetical protein.
       0.579
EAQ40171.1
Hypothetical protein.
  
 
 
 0.451
EAQ37797.1
Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.435
EAQ40274.1
Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.415
EAQ40272.1
Sugar transferases involved in lipopolysaccharide synthesis.
 
  
 0.414
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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