STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBdTDP-D-glucose 4,6-dehydratase. (347 aa)    
Predicted Functional Partners:
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes.
 
 0.999
rmlA
Glucose-1-phosphate thymidylyltransferase; dTDP-glucose pyrophosphorylase.
 
 0.999
rfbD
dTDP-4-dehydrorhamnose reductase.
 
 0.996
EAQ39734.1
Nucleotidyl transferase; dTDP-glucose pyrophosphorylase.
 
 
 0.972
EAQ40283.1
Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.920
EAQ39700.1
NAD-dependent epimerase/dehydratase family protein; Nucleoside-diphosphate-sugar epimerases.
  
 
0.918
EAQ40290.1
Predicted UDP-glucose 6-dehydrogenase.
 
  
 0.860
EAQ40277.1
Threonine dehydrogenase and related Zn- dependent dehydrogenases.
  
  
 0.856
wecB
UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.847
EAQ37797.1
Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.825
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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