STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pycBiotin carboxylase. (1150 aa)    
Predicted Functional Partners:
EAQ38508.1
NADP-dependent malate dehydrogenase/phosphate acetyltransferase; Malic enzyme.
   
 0.953
EAQ38829.1
propionyl-CoA carboxylase beta chain; Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 0.948
pykF
Pyruvate kinase.
   
 0.940
gltA
Citrate synthase.
  
 0.940
mdh
Malate/lactate dehydrogenases.
  
 0.937
pckA
Phosphoenolpyruvate carboxykinase (ATP).
    
 0.921
mqo
Malate dehydrogenase (quinone); Predicted dehydrogenase.
   
 
 0.920
ppc
Phosphoenolpyruvate carboxylase.
     
 0.919
pdhB
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit.
   
 
 0.914
pdhA
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit.
   
 
 0.905
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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