STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxH1Pyridoxamine-phosphate oxidase. (214 aa)    
Predicted Functional Partners:
pdxJ
Pyridoxine 5'-phosphate synthase; Pyridoxal phosphate biosynthesis protein.
  
  
 0.927
pdxH3
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Pyridoxamine-phosphate oxidase.
     
  0.900
pyrB
Ornithine carbamoyltransferase.
      0.862
EAQ40361.1
Phosphoglycerate mutase family protein; Phosphohistidine phosphatase SixA.
       0.804
ppx
Exopolyphosphatase.
       0.801
ppk1
Polyphosphate kinase.
       0.795
rnz
Ribonuclease Z; Metal-dependent hydrolases of the beta- lactamase superfamily III.
       0.650
EAQ40365.1
Hypothetical protein.
       0.634
pyrR1
PyrR bifunctional protein; Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase.
  
    0.628
EAQ40363.2
Hypothetical protein.
       0.610
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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