STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
susC1TonB dependent/ligand-gated channel. (721 aa)    
Predicted Functional Partners:
EAQ37692.1
Hypothetical protein.
 
     0.807
EAQ39483.1
Hypothetical protein.
  
     0.657
EAQ40527.2
Hypothetical protein.
       0.615
EAQ38337.1
Organic solvent tolerance protein OstA.
  
  
  0.549
EAQ40529.1
Uncharacterized protein conserved in bacteria.
       0.537
EAQ40530.1
Hypothetical protein.
       0.508
EAQ40517.1
Hypothetical protein.
  
     0.481
EAQ38956.2
OmpA family protein; Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
 0.466
EAQ40559.1
OmpA family protein; Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
 0.466
EAQ39371.1
OmpA family protein; Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
    
 0.466
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.