STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplY50S ribosomal protein L25, Ctc-form; Ribosomal protein L25 (general stress protein Ctc). (208 aa)    
Predicted Functional Partners:
rplM
Ribosomal protein L13.
  
 
 0.992
rpsB
Ribosomal protein S2.
  
 
 0.991
rpsI
Ribosomal protein S9.
  
 
 0.991
rpsF
Ribosomal protein S6.
  
 
 0.991
rplI
Ribosomal protein L9.
 
 
 0.991
rplU
Ribosomal protein L21.
  
 
 0.990
rplK
Ribosomal protein L11.
   
 
 0.990
rplA
Ribosomal protein L1.
   
 
 0.990
rplJ
Ribosomal protein L10.
   
 
 0.990
rpsJ
Ribosomal protein S10.
   
 
 0.990
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.