STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspFGeneral secretion pathway protein F; Type II secretory pathway, component PulF. (376 aa)    
Predicted Functional Partners:
gspE
General secretion pathway protein E; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 0.990
gspG
General secretion pathway protein G; Type II secretory pathway, pseudopilin PulG.
 
  
 0.952
gspD
General secretion pathway protein D; Type II secretory pathway, component HofQ.
 
  
 0.912
EAQ39504.1
Phage-related protein, tail component.
 
     0.864
EAQ39500.1
Hypothetical protein.
  
  
 0.845
EAQ39514.2
Rhs family protein.
 
     0.737
AIN49945.1
23S rRNA-intervening sequence protein.
  
  
 0.698
EAQ38801.1
Hypothetical protein.
  
  
 0.685
EAQ39515.1
Hypothetical protein.
 
     0.668
ssb1
Single-stranded DNA-binding protein.
  
    0.553
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.