STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtYLycopene beta cyclase. (403 aa)    
Predicted Functional Partners:
crtI
Phytoene dehydrogenase and related proteins.
 
 
 0.960
crtZ
Beta-carotene hydroxylase.
 
  
 0.941
etfB
Electron transfer flavoprotein, beta subunit.
  
 
 0.631
EAQ39552.3
Predicted ICC-like phosphoesterases.
       0.565
etfA
Electron transfer flavoprotein, alpha subunit.
  
 
 0.562
EAQ39551.1
Hypothetical protein.
 
     0.511
crtB
Phytoene/squalene synthetase.
 
  
 0.510
EAQ38105.1
Transcription regulator, MerR family; Predicted transcriptional regulators.
 
    0.476
EAQ38702.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.