STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recJsingle-stranded-DNA-specific exonuclease RecJ; Single-stranded DNA-specific exonuclease. (563 aa)    
Predicted Functional Partners:
recQ3
Superfamily II DNA helicase.
    
 0.905
recQ5
Superfamily II DNA helicase.
   
 0.852
EAQ39610.1
Predicted redox protein, regulator of disulfide bond formation.
       0.791
EAQ39609.1
Hypothetical protein.
       0.773
EAQ40102.1
DEAD/DEAH box helicase; Primosomal protein N' (replication factor Y) - superfamily II helicase.
 
     0.637
mutS3
Mismatch repair ATPase (MutS family).
 
  
 0.596
recQ1
Superfamily II DNA helicase.
    
 0.577
EAQ39128.1
Competence protein; Predicted membrane metal-binding protein.
 
   
 0.561
radA
DNA repair protein RadA/Sms; Predicted ATP-dependent serine protease.
 
  
 0.561
ssb3
Single-stranded DNA-binding protein.
  
 
 0.553
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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