STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38143.1Peptidase family M20/M25/M40; Acetylornithine deacetylase/Succinyl- diaminopimelate desuccinylase and related deacylases. (462 aa)    
Predicted Functional Partners:
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains.
   
 0.658
exoA
Exodeoxyribonuclease III (Xth); Exonuclease III.
      0.500
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Acetylglutamate semialdehyde dehydrogenase.
  
 
 0.405
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.