STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38191.1Cold shock proteins. (64 aa)    
Predicted Functional Partners:
EAQ39661.1
Exoribonuclease R.
    
 0.563
EAQ38192.1
Hypothetical protein.
       0.545
pnp
Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase).
    
 0.514
rpsL
Ribosomal protein S12.
   
 
 0.505
EAQ39469.1
Ras family protein; GTPase SAR1 and related small G proteins.
   
  0.503
rpsQ
Ribosomal protein S17.
   
 
 0.481
rpsE
Ribosomal protein S5.
   
 
 0.472
exoA
Exodeoxyribonuclease III (Xth); Exonuclease III.
   
 0.466
rplO
Ribosomal protein L15.
   
   0.464
rplC
Ribosomal protein L3.
   
   0.451
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.