STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCFeS assembly ATPase SufC; ABC-type sugar transport systems, ATPase components. (250 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB; ABC-type transport system involved in Fe-S cluster assembly, permease component.
 0.999
sufD
FeS assembly protein SufD; ABC-type transport system involved in Fe-S cluster assembly, permease component.
 0.998
sufS
Selenocysteine lyase.
  
 0.994
EAQ38221.1
FeS assembly SUF system protein; Predicted metal-sulfur cluster biosynthetic enzyme.
  
 0.946
sufA
Scaffold protein for iron-sulfur cluster assembly.
  
 
 0.822
csdE
Cysteine desulfurase, sulfur acceptor subunit CsdE; SufE protein probably involved in Fe-S center assembly.
 
   0.762
EAQ38228.1
Hypothetical protein.
       0.740
EAQ38229.1
Metallo-beta-lactamase superfamily protein; Zn-dependent hydrolases, including glyoxylases.
     
 0.729
EAQ38967.1
Aminotransferase class-V.
  
  
 0.685
EAQ40315.1
Aminotransferase class-V; Selenocysteine lyase.
 
  
 0.685
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.