STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38475.1Glycosyltransferases, probably involved in cell wall biogenesis. (496 aa)    
Predicted Functional Partners:
EAQ38476.1
Glycosyltransferases involved in cell wall biogenesis.
 
   0.937
AIN49948.1
Predicted integral membrane protein.
 
   0.923
EAQ38477.1
Uncharacterized protein conserved in bacteria.
       0.793
EAQ39088.1
NADH dehydrogenase; Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
 0.725
EAQ39087.1
Iron-sulfur cluster-binding protein; Polyferredoxin.
 
     0.656
EAQ39091.1
Hypothetical protein.
 
    0.599
EAQ38478.1
FAD dependent oxidoreductase; Glycine/D-amino acid oxidases (deaminating).
       0.555
EAQ38484.1
Predicted xylanase/chitin deacetylase.
  
  
 0.529
EAQ38051.2
Sterol desaturase.
 
     0.492
AIN49953.1
Hypothetical protein; FOG: TPR repeat.
  
 
 0.473
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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