STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38502.1Cytochrome P450. (441 aa)    
Predicted Functional Partners:
menE
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.857
rplF
Ribosomal protein L6P/L9E.
    
  0.823
EAQ38503.1
Putative iron-sulfur cluster-binding protein.
       0.799
polA
DNA polymerase I - 3'-5' exonuclease and polymerase domains.
    
 0.778
EAQ39716.1
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.777
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.777
EAQ40030.1
Acyl carrier protein.
 
 0.698
ruvB
Holliday junction resolvasome, helicase subunit.
       0.691
fdx
Ferredoxin, 2Fe-2S; Ferredoxin.
  
 0.685
acpP
Acyl carrier protein.
  
 0.648
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.