STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPhenylacetic acid degradation protein PaaD; Uncharacterized protein, possibly involved in aromatic compounds catabolism. (136 aa)    
Predicted Functional Partners:
paaJ
phenylacetate-CoA oxygenase, PaaJ subunit; Predicted metal-sulfur cluster biosynthetic enzyme.
 
 
 0.987
paaI
phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.984
paaB1
phenylacetate-CoA oxygenase, PaaB subunit; Uncharacterized enzyme of phenylacetate metabolism.
 
 
 0.979
paaA
phenylacetate-CoA oxygenase, PaaA subunit.
 
 
 0.978
paaK
phenylacetate-CoA oxygenase/reductase, PaaK subunit; Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
  0.958
EAQ39716.1
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.913
EAQ39704.1
Coenzyme F390 synthetase.
  
 
 0.908
paaN
Phenylacetic acid degradation protein paaN; NAD-dependent aldehyde dehydrogenases.
 
  
 0.908
EAQ38558.1
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.822
paaB3
Phenylacetate degradation probable enoyl-CoA hydratase paaB; Enoyl-CoA hydratase/carnithine racemase.
 
 
 0.729
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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