STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38675.2DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (152 aa)    
Predicted Functional Partners:
EAQ40177.3
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
  
  0.818
EAQ38674.1
Hypothetical protein.
  
    0.779
EAQ39252.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.773
EAQ39248.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.766
EAQ40135.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.766
EAQ40532.3
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.750
EAQ38055.2
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.679
EAQ37945.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.552
EAQ40406.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
     0.534
rpoC
DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 0.498
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.