STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
radCDNA repair proteins. (237 aa)    
Predicted Functional Partners:
EAQ38680.1
Hypothetical protein; Predicted xylanase/chitin deacetylase.
       0.810
EAQ38681.1
Haloacid dehalogenase-like hydrolase; Predicted hydrolase (HAD superfamily).
       0.810
EAQ40516.1
Nucleotide-binding protein implicated in inhibition of septum formation.
  
  
 0.717
EAQ39710.1
Site-specific DNA-methyltransferase (adenine-specific); Adenine-specific DNA methylase.
 
      0.709
mreC
Cell shape-determining protein.
  
  
 0.705
EAQ39448.3
Putative amidophosphoribosyl-transferase; Predicted amidophosphoribosyltransferases.
 
    0.703
mutS3
Mismatch repair ATPase (MutS family).
 
   
 0.656
EAQ37957.1
Hypothetical protein.
       0.632
AIN49952.1
Hypothetical protein.
       0.621
mutL
DNA mismatch repair enzyme (predicted ATPase).
 
   
 0.603
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.