STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ37960.3Rhomboid family protein; Uncharacterized membrane protein (homolog of Drosophila rhomboid). (280 aa)    
Predicted Functional Partners:
EAQ37959.2
ATPase family associated with various cellular activities (AAA); ATPase related to the helicase subunit of the Holliday junction resolvase.
  
    0.630
EAQ39238.1
AAA-metalloprotease FtsH, with ATPase domain; ATP-dependent Zn proteases.
   
 
 0.473
amiA
N-acetylmuramoyl-L-alanine amidase.
  
   0.471
tatA
Twin arginine-targeting protein translocase, TatA/E family.
   
 
 0.444
EAQ38064.1
MttA/Hcf106 family protein.
   
 
 0.444
EAQ39619.3
5-formyltetrahydrofolate cyclo-ligase.
  
    0.419
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.