Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR13157.1Hypothetical protein; COG0622 Predicted phosphoesterase. (165 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
 
   0.668
EAR12154.1
Hypothetical protein; COG0251 Putative translation initiation inhibitor, yjgF family.
  
     0.642
EAR13155.1
ABC transporter, ATP-binding protein, MsbA family; COG1132 ABC-type multidrug transport system, ATPase and permease components.
       0.627
EAR13190.1
Glutamate racemase; COG2825 Outer membrane protein.
  
     0.617
EAR12820.1
Hypothetical protein.
  
     0.581
EAR12674.1
Hypothetical protein.
  
     0.489
EAR13732.1
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
     0.420
EAR12337.1
Putative thioredoxin peroxidase; COG0450 Peroxiredoxin.
   
   0.412
EAR12574.1
Peroxidase; COG0450 Peroxiredoxin.
   
   0.412
EAR11978.1
Zinc uptake transporter; COG0428 Predicted divalent heavy-metal cations transporter.
  
    0.411
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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