Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR13233.1Thioredoxin M; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family. (105 aa)    
Predicted Functional Partners:
EAR12327.1
COG0492 Thioredoxin reductase.
 
 0.964
rho-2
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
    0.749
EAR13237.1
Probable thioredoxin resuctase; COG0492 Thioredoxin reductase.
  
  0.692
EAR13487.1
COG0209 Ribonucleotide reductase, alpha subunit.
  
 0.654
groEL
Chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.640
ribB
Putative riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.591
EAR12229.1
Large subunit of NADH-dependent glutamate synthase; COG0067 Glutamate synthase domain 1.
    
 
 0.558
EAR13517.1
Hypothetical protein; COG0492 Thioredoxin reductase.
   
  0.548
EAR13789.1
Probable thioredoxin resuctase; COG0492 Thioredoxin reductase.
   
  0.548
EAR13486.1
COG0209 Ribonucleotide reductase, alpha subunit.
  
 
 0.538
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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