EAR13258.1 protein (Polaribacter irgensii) - STRING interaction network

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Score

EAR13258.1

COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (639 aa)

Predicted Functional Partners:

rplD

0.764

rplC

0.757

rplU

0.757

rpsO

0.756

rpsC

0.755

rplM

0.754

rpmH

0.754

rpmD

0.753

rplR

0.753

rpmF

0.753

Your Current Organism:

Polaribacter irgensii

NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAR13258.1	rplC	PI23P_02152	PI23P_00620	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.757
EAR13258.1	rplD	PI23P_02152	PI23P_00615	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.764
EAR13258.1	rplM	PI23P_02152	PI23P_05347	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.754
EAR13258.1	rplR	PI23P_02152	PI23P_00540	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.753
EAR13258.1	rplU	PI23P_02152	PI23P_04317	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.757
EAR13258.1	rpmD	PI23P_02152	PI23P_00530	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG1841 Ribosomal protein L30/L7E.	0.753
EAR13258.1	rpmF	PI23P_02152	PI23P_04667	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein I; COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.753
EAR13258.1	rpmH	PI23P_02152	PI23P_12672	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.754
EAR13258.1	rpsC	PI23P_02152	PI23P_00590	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Putative 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.755
EAR13258.1	rpsO	PI23P_02152	PI23P_02627	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.756
rplC	EAR13258.1	PI23P_00620	PI23P_02152	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.757
rplC	rplD	PI23P_00620	PI23P_00615	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	PI23P_00620	PI23P_05347	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	PI23P_00620	PI23P_00540	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	PI23P_00620	PI23P_04317	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmD	PI23P_00620	PI23P_00530	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG1841 Ribosomal protein L30/L7E.	0.999
rplC	rpmF	PI23P_00620	PI23P_04667	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein I; COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplC	rpmH	PI23P_00620	PI23P_12672	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.999
rplC	rpsC	PI23P_00620	PI23P_00590	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Putative 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	PI23P_00620	PI23P_02627	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999