Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR13375.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (287 aa)    
Predicted Functional Partners:
EAR13374.1
Hypothetical protein.
 
     0.742
EAR13969.1
Putative hemin receptor; COG5651 PPE-repeat proteins.
  
     0.647
EAR13373.1
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
       0.593
EAR13372.1
COG2166 SufE protein probably involved in Fe-S center assembly.
       0.574
EAR13168.1
Putative outer membrane protein.
  
     0.558
EAR13276.1
Hypothetical protein.
  
     0.547
EAR13974.1
COG0729 Outer membrane protein.
  
     0.462
EAR13415.1
Putative conserved membrane exported protein.
  
     0.457
EAR13370.1
Amidophosphoribosyltransferase; COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase.
 
     0.427
EAR13371.1
Carbohydrate kinase, PfkB family protein; COG0524 Sugar kinases, ribokinase family.
       0.416
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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