Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR13429.1Hypothetical protein. (309 aa)    
Predicted Functional Partners:
EAR13428.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.899
EAR13430.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.815
EAR11618.1
50S ribosomal protein L31.
 
     0.777
EAR13702.1
Hypothetical protein.
  
     0.703
EAR11719.1
TPR-domain containing protein; COG0457 FOG: TPR repeat.
  
   
 0.702
EAR13972.1
porT protein.
 
   
 0.686
EAR13328.1
Hypothetical protein.
  
     0.673
EAR12862.1
Hypothetical protein.
  
     0.672
EAR12429.1
COG1832 Predicted CoA-binding protein.
  
     0.668
EAR13638.1
Tetratricopeptide repeat domain protein; COG0457 FOG: TPR repeat.
  
     0.658
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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