Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR13523.1Hypothetical protein; COG0392 Predicted integral membrane protein. (323 aa)    
Predicted Functional Partners:
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.813
panC
Putative pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
       0.748
radA
Putative DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.721
EAR12458.1
beta-N-acetylglucosaminidase; COG1472 Beta-glucosidase-related glycosidases.
  
   
 0.641
EAR13519.1
Hypothetical protein.
 
     0.639
EAR12195.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.636
EAR12981.1
Putative DNA-binding protein; COG1396 Predicted transcriptional regulators.
  
     0.617
EAR13520.1
Glycogen synthase-related protein; COG0297 Glycogen synthase.
       0.584
EAR12470.1
COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.549
rho
Transcription termination factor Rho.
 
     0.539
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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