STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR13645.1FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (437 aa)    
Predicted Functional Partners:
EAR13646.1
ABC transporter, ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 0.999
EAR13643.1
COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.991
EAR13373.1
Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
   
 0.846
EAR12162.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
 
 
 0.749
EAR13648.1
Scaffold protein for iron-sulfur cluster assembly; Belongs to the HesB/IscA family.
  
 
 0.739
EAR13647.1
Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   
0.661
EAR13372.1
COG2166 SufE protein probably involved in Fe-S center assembly.
 
   0.639
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.