Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR13713.1Hypothetical protein; COG0060 Isoleucyl-tRNA synthetase. (299 aa)    
Predicted Functional Partners:
EAR13711.1
Hypothetical protein.
 
     0.950
EAR13712.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
 
     0.949
EAR13710.1
Putative Oxidoreductase, FAD-binding protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.927
EAR13714.1
Outer membrane receptor for transport of vitamin B, putative; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.814
EAR13715.1
Hypothetical protein.
 
     0.735
EAR12374.1
Hypothetical protein.
  
     0.498
EAR11840.1
Hypothetical protein.
  
     0.493
EAR13709.1
Hypothetical protein.
       0.479
EAR11961.1
Hypothetical protein.
  
     0.447
EAR11778.1
Hypothetical protein; COG2608 Copper chaperone.
  
     0.427
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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