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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR13717.1COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase). (350 aa)    
Predicted Functional Partners:
EAR13718.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.897
EAR13719.1
Hypothetical protein.
 
  
  0.873
EAR13722.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.649
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
    
  0.594
EAR13716.1
Hypothetical protein.
       0.538
EAR12031.1
Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.501
EAR13720.1
COG0346 Lactoylglutathione lyase and related lyases.
       0.483
EAR11546.1
Hypothetical protein.
  
     0.438
EAR11508.1
Heptosyltransferase; COG0859 ADP-heptose:LPS heptosyltransferase.
  
     0.425
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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