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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR13726.1Putative lycopene cyclase; COG2303 Choline dehydrogenase and related flavoproteins. (382 aa)    
Predicted Functional Partners:
EAR12017.1
Beta carotene hydroxylase; COG3000 Sterol desaturase.
 
  
 0.810
EAR12083.1
COG1233 Phytoene dehydrogenase and related proteins.
 
 
 0.802
EAR13725.1
Ribosomal large subunit pseudouridine synthase A; COG0564 Pseudouridylate synthases, 23S RNA-specific.
  
    0.774
EAR12735.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.765
EAR12636.1
Amino acid adenylation; COG0001 Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.703
EAR13727.1
Hypothetical protein.
 
     0.659
EAR12736.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.615
EAR12082.1
COG1562 Phytoene/squalene synthetase.
 
 
 0.592
EAR12019.1
COG2324 Predicted membrane protein.
 
  
 0.522
EAR13177.1
Hypothetical protein; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
 
 0.515
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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