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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR13924.1Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport. (1094 aa)    
Predicted Functional Partners:
EAR13923.1
Putative outer membrane protein probably involved in nutrient binding.
 
 
   0.941
EAR13538.1
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.811
EAR12146.1
Putative outer membrane protein probably involved in nutrient binding.
 
 
   0.763
EAR13925.1
Putative anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
     0.727
EAR11672.1
Hypothetical protein.
  
 
   0.711
EAR12134.1
Putative outer membrane protein; COG0457 FOG: TPR repeat.
  
 
   0.684
EAR12466.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.649
EAR12239.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
 
 0.602
EAR13796.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.565
EAR12937.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.559
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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