Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12438.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
EAR12439.1
Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator.
 
    0.833
EAR12441.1
COG3296 Uncharacterized protein conserved in bacteria.
  
    0.646
EAR12440.1
Hypothetical protein; COG1695 Predicted transcriptional regulators.
       0.645
EAR12437.1
Hypothetical protein.
       0.625
EAR13599.1
Putative transporter; COG0477 Permeases of the major facilitator superfamily.
  
     0.416
EAR12442.1
Hypothetical protein.
       0.405
EAR13612.1
Putative outer membrane protein, probably involved in nutrient binding; COG5651 PPE-repeat proteins.
  
     0.400
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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