Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12446.1Hypothetical protein. (1072 aa)    
Predicted Functional Partners:
EAR12445.1
Hypothetical protein.
 
     0.802
EAR12444.1
Hypothetical protein; COG5505 Predicted integral membrane protein.
       0.773
EAR12443.1
Thiol:disulfide interchange protein.
       0.654
EAR13839.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.649
EAR13443.1
Hypothetical protein.
  
     0.546
EAR13902.1
Putative membrane associated hydrolase; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.516
EAR12701.1
Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.495
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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