Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAR12471.1Hypothetical protein; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). (198 aa)    
Predicted Functional Partners:
EAR12472.1
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.838
EAR12474.1
Hypothetical protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.738
EAR13525.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.687
EAR13150.1
COG2259 Predicted membrane protein.
  
     0.636
EAR13972.1
porT protein.
  
     0.635
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.634
EAR12476.1
SpoOJ regulator protein; COG1192 ATPases involved in chromosome partitioning.
       0.634
EAR12475.1
Putative ParB-like chromosome partitioning protein; COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
       0.633
EAR13269.1
Hypothetical protein.
  
     0.614
EAR12283.1
Hypothetical protein; COG2971 Predicted N-acetylglucosamine kinase.
  
     0.603
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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