Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR12553.1Putative lipoprotein. (265 aa)    
Predicted Functional Partners:
EAR12552.1
COG3766 Predicted membrane protein.
 
     0.940
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.937
EAR12555.1
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
 
     0.847
EAR12556.1
Hypothetical protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
     0.840
EAR13393.1
Putative helicase; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
 
 0.820
EAR12548.1
COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
 
    0.802
EAR12648.1
Sensory transduction histidine kinase; COG0784 FOG: CheY-like receiver.
   
 0.778
EAR12550.1
Spermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
       0.723
EAR12549.1
Cation channel family protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
  
    0.717
EAR12554.1
Hypothetical protein.
       0.710
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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