Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12554.1Hypothetical protein. (183 aa)    
Predicted Functional Partners:
EAR12553.1
Putative lipoprotein.
       0.710
EAR12552.1
COG3766 Predicted membrane protein.
       0.645
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.634
EAR12550.1
Spermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
       0.612
EAR12548.1
COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
       0.595
EAR12549.1
Cation channel family protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.595
EAR12555.1
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
       0.545
EAR12556.1
Hypothetical protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
       0.509
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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