Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12555.1COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription. (232 aa)    
Predicted Functional Partners:
EAR12439.1
Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator.
  
 
 0.946
EAR12556.1
Hypothetical protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
     0.942
EAR12648.1
Sensory transduction histidine kinase; COG0784 FOG: CheY-like receiver.
    
 
 0.937
EAR12557.1
Putative prophage LambdaCh01, repressor protein; COG1396 Predicted transcriptional regulators.
 
    0.889
EAR12891.1
FixL-related histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 
 0.854
EAR12552.1
COG3766 Predicted membrane protein.
 
     0.851
EAR12553.1
Putative lipoprotein.
 
     0.847
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
     0.773
EAR12484.1
Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator.
  
 
 0.765
EAR12554.1
Hypothetical protein.
       0.545
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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