Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR12637.1COG0342 Preprotein translocase subunit SecD. (265 aa)    
Predicted Functional Partners:
EAR12642.1
Hypothetical protein; COG5295 Autotransporter adhesin.
 
     0.510
EAR13066.1
Putative FtsK/SpoIIIE-like protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
    
   0.452
EAR12641.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 
  0.442
EAR13816.1
Serine protease / subtilase peptidase; COG1404 Subtilisin-like serine proteases.
    
  0.423
EAR12044.1
COG1404 Subtilisin-like serine proteases.
    
  0.423
EAR13079.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
    
  0.422
EAR12023.1
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
    
  0.422
EAR11516.1
Putative outer membrane protein probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
 
   0.401
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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