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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR12779.1Putative flagellar motor protein MotB; COG1196 Chromosome segregation ATPases. (289 aa)    
Predicted Functional Partners:
EAR13992.1
Putative flagellar motor protein MotB; COG1196 Chromosome segregation ATPases.
  
  
 
0.817
EAR13873.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
 0.774
EAR12648.1
Sensory transduction histidine kinase; COG0784 FOG: CheY-like receiver.
  
  
 0.708
EAR11607.1
Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
   
   0.658
EAR13428.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 0.621
EAR11619.1
Hypothetical protein.
   
 0.550
EAR12813.1
COG1862 Preprotein translocase subunit YajC.
  
 
 
 0.528
EAR12511.1
Nuclease sbcCD subunit C; COG0419 ATPase involved in DNA repair.
    
  0.527
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.513
EAR12781.1
COG1011 Predicted hydrolase (HAD superfamily).
       0.500
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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