Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12845.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
EAR12843.1
COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
 
     0.821
EAR12844.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
       0.773
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
       0.532
EAR12840.1
Probable acrA1 protein; COG1087 UDP-glucose 4-epimerase.
       0.462
EAR12841.1
Aminomethyltransferase.
       0.462
EAR12839.1
Integral membrane protein; COG1988 Predicted membrane-bound metal-dependent hydrolases.
       0.438
EAR12838.1
Hypothetical protein.
       0.419
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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