Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR13024.1COG2982 Uncharacterized protein involved in outer membrane biogenesis. (861 aa)    
Predicted Functional Partners:
EAR11578.1
Putative outer membrane protein probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.674
EAR12202.1
Hypothetical protein.
  
     0.636
EAR12206.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.634
EAR11583.1
Hypothetical protein.
  
     0.604
EAR11541.1
50S ribosomal protein L20; COG0419 ATPase involved in DNA repair.
  
     0.571
EAR11609.1
Hypothetical protein; COG1452 Organic solvent tolerance protein OstA.
  
   
 0.557
EAR13429.1
Hypothetical protein.
  
     0.555
EAR11579.1
Hypothetical protein.
  
     0.505
EAR13138.1
Hypothetical protein; COG1878 Predicted metal-dependent hydrolase.
  
     0.489
EAR13031.1
Hypothetical protein.
  
     0.484
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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