Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR11871.1ABC transporter, substrate-binding protein, putative; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. (304 aa)    
Predicted Functional Partners:
EAR13939.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
  
 
 0.597
EAR11589.1
COG0431 Predicted flavoprotein.
  
 
  0.572
EAR12891.1
FixL-related histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.569
EAR12648.1
Sensory transduction histidine kinase; COG0784 FOG: CheY-like receiver.
    
 0.557
EAR11870.1
Hypothetical protein.
       0.464
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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