Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR11909.1Hypothetical protein; COG1309 Transcriptional regulator. (216 aa)    
Predicted Functional Partners:
EAR11911.1
COG0845 Membrane-fusion protein.
 
   
 0.958
EAR11910.1
HlyB/MsbA family ABC transporter; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
 
     0.955
EAR11912.1
COG1538 Outer membrane protein.
 
     0.921
EAR13819.1
Phenylacetate-CoA oxygenase/reductase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
 0.631
folE-2
GTP cyclohydrolase I.
  
     0.471
EAR12332.1
3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein; COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.461
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.451
EAR11908.1
COG1278 Cold shock proteins.
     
 0.433
EAR13731.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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