Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12083.1COG1233 Phytoene dehydrogenase and related proteins. (488 aa)    
Predicted Functional Partners:
EAR12082.1
COG1562 Phytoene/squalene synthetase.
 
 0.999
EAR12017.1
Beta carotene hydroxylase; COG3000 Sterol desaturase.
 
   
 0.868
EAR12084.1
Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
 
  
 0.811
EAR13726.1
Putative lycopene cyclase; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.802
EAR12019.1
COG2324 Predicted membrane protein.
 
  
 0.779
EAR13737.1
Putative isoprenoid biosynthesis related protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.493
EAR12085.1
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.428
EAR12086.1
Hypothetical protein.
       0.428
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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