STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR12147.1Putative outer membrane protein, probably involved in nutrient binding; COG4771 Outer membrane receptor for ferrienterochelin and colicins. (1055 aa)    
Predicted Functional Partners:
EAR12146.1
Putative outer membrane protein probably involved in nutrient binding.
     0.921
EAR12148.1
Hypothetical protein; COG3292 Predicted periplasmic ligand-binding sensor domain.
 
     0.863
EAR12145.1
Hypothetical protein; COG0516 IMP dehydrogenase/GMP reductase.
 
     0.837
EAR12136.1
Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin.
  
     0.700
EAR13923.1
Putative outer membrane protein probably involved in nutrient binding.
 
     0.668
EAR13607.1
Hypothetical protein.
  
     0.634
EAR12239.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
   0.618
EAR12134.1
Putative outer membrane protein; COG0457 FOG: TPR repeat.
 
     0.602
EAR12143.1
Laminarinase; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
     0.575
EAR12092.1
TonB-dependent receptor, putative; COG1472 Beta-glucosidase-related glycosidases.
  
  
  0.553
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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