Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR12216.1Hypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (127 aa)    
Predicted Functional Partners:
EAR12864.1
Hypothetical protein.
  
     0.739
EAR12805.1
Hypothetical protein.
  
     0.702
EAR13261.1
Hypothetical protein.
  
     0.676
EAR13760.1
Hypothetical protein.
  
     0.674
EAR13432.1
Hypothetical protein.
  
     0.639
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.638
EAR13067.1
Hypothetical protein.
 
     0.613
EAR12214.1
4-amino-4-deoxychorismate lyase, putative; COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
       0.612
EAR13525.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.605
EAR13702.1
Hypothetical protein.
  
     0.563
Your Current Organism:
Polaribacter irgensii
NCBI taxonomy Id: 313594
Other names: P. irgensii 23-P, Polaribacter irgensii 23-P
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