STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFU69367.1DUF4295 superfamily protein. (50 aa)    
Predicted Functional Partners:
rpmG
LSU ribosomal protein L33p RpmG; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.960
rpmB
LSU ribosomal protein L28p RpmB; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.948
rpsO
SSU ribosomal protein S15p (S13e) RspO; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.732
rpsU
SSU ribosomal protein S21p RspU; Belongs to the bacterial ribosomal protein bS21 family.
    
   0.732
rplQ
LSU ribosomal protein L17p RplQ.
    
   0.732
rpsD
SSU ribosomal protein S4p (S9e) RspD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.732
rpsK
SSU ribosomal protein S11p (S14e) RpsK; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
   0.732
rpmJ
LSU ribosomal protein L36p RpmJ; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.732
rplO
LSU ribosomal protein L15p (L27Ae) RplO; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.732
rpmD
LSU ribosomal protein L30p (L7e) RpmD.
    
   0.732
Your Current Organism:
Psychroflexus torquis
NCBI taxonomy Id: 313595
Other names: P. torquis ATCC 700755, Psychroflexus torquis ACAM 623, Psychroflexus torquis ATCC 700755, Psychroflexus torquis str. ATCC 700755, Psychroflexus torquis strain ATCC 700755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.