STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplILSU ribosomal protein L9p RplI; Binds to the 23S rRNA. (149 aa)    
Predicted Functional Partners:
rpsF
SSU ribosomal protein S6p RspF; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.999
rpsR
SSU ribosomal protein S18p RspR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.999
rplQ
LSU ribosomal protein L17p RplQ.
 
 
 0.998
rplA
LSU ribosomal protein L1p (L10Ae) RplA; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
 
 
 0.998
rplJ
LSU ribosomal protein L10p (P0) RplJ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.998
rpsD
SSU ribosomal protein S4p (S9e) RspD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.997
rpsK
SSU ribosomal protein S11p (S14e) RpsK; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.997
rplO
LSU ribosomal protein L15p (L27Ae) RplO; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.997
rpmD
LSU ribosomal protein L30p (L7e) RpmD.
   
 
 0.997
rpsE
SSU ribosomal protein S5p (S2e) RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
 
 0.997
Your Current Organism:
Psychroflexus torquis
NCBI taxonomy Id: 313595
Other names: P. torquis ATCC 700755, Psychroflexus torquis ACAM 623, Psychroflexus torquis ATCC 700755, Psychroflexus torquis str. ATCC 700755, Psychroflexus torquis strain ATCC 700755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.