Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAR14115.1 | recG | RB2501_01775 | RB2501_14464 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.601 |
| EAR14115.1 | rplQ | RB2501_01775 | RB2501_09990 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Putative 50S ribosomal protein L17. | 0.902 |
| EAR14115.1 | trmH | RB2501_01775 | RB2501_00151 | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.542 |
| EAR14438.1 | EAR14439.1 | RB2501_00141 | RB2501_00146 | Putative glyoxalase. | Hypothetical protein. | 0.792 |
| EAR14438.1 | trmH | RB2501_00141 | RB2501_00151 | Putative glyoxalase. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.547 |
| EAR14439.1 | EAR14438.1 | RB2501_00146 | RB2501_00141 | Hypothetical protein. | Putative glyoxalase. | 0.792 |
| EAR14439.1 | trmH | RB2501_00146 | RB2501_00151 | Hypothetical protein. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.607 |
| EAR15903.1 | engB | RB2501_03375 | RB2501_02915 | Putative SpoU rRNA methylase family protein. | Putative GTP-binding cell division protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.578 |
| EAR15903.1 | metG | RB2501_03375 | RB2501_05150 | Putative SpoU rRNA methylase family protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.561 |
| EAR15903.1 | rnr | RB2501_03375 | RB2501_06895 | Putative SpoU rRNA methylase family protein. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.587 |
| EAR15903.1 | rplQ | RB2501_03375 | RB2501_09990 | Putative SpoU rRNA methylase family protein. | Putative 50S ribosomal protein L17. | 0.498 |
| EAR15903.1 | trmH | RB2501_03375 | RB2501_00151 | Putative SpoU rRNA methylase family protein. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.503 |
| cobB | trmH | RB2501_00156 | RB2501_00151 | Hypothetical protein; Belongs to the sirtuin family. Class III subfamily. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.583 |
| engB | EAR15903.1 | RB2501_02915 | RB2501_03375 | Putative GTP-binding cell division protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Putative SpoU rRNA methylase family protein. | 0.578 |
| engB | rnr | RB2501_02915 | RB2501_06895 | Putative GTP-binding cell division protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.425 |
| engB | rplQ | RB2501_02915 | RB2501_09990 | Putative GTP-binding cell division protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | Putative 50S ribosomal protein L17. | 0.894 |
| engB | trmH | RB2501_02915 | RB2501_00151 | Putative GTP-binding cell division protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | spoU protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.518 |
| metG | EAR15903.1 | RB2501_05150 | RB2501_03375 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Putative SpoU rRNA methylase family protein. | 0.561 |
| metG | rnr | RB2501_05150 | RB2501_06895 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.494 |
| metG | rplQ | RB2501_05150 | RB2501_09990 | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Putative 50S ribosomal protein L17. | 0.514 |
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